Table of 20 published gene expression datasets related to different types of cancer

Dataset Name Array Type Tissue Total samples Number of classes Samples per class Classes Total Probes Reduced Probes
Armstrong-2002-v2 Affymetrix Blood 72 3 24, 20, 28 ALL, MLL, AML 12582 110
Bhattacharjee-2001 Affymetrix Lung 203 5 139, 17, 6, 21, 20 AD, NL, SCLC, SQ, COID 12600 7
Dyrskjot-2003 Affymetrix Bladder 40 3 9, 20, 11 T2+, TA, T1 7129 60
Golub-1999-v1 Affymetrix Bone Marrow 72 2 47, 25 ALL, AML 7129 93
Golub-1999-v2 Affymetrix Bone Marrow 72 3 38, 9, 25 ALL-B, ALL-T, AML 7129 93
Laiho-2007 Affymetrix Colon 37 2 8, 29 Serrated CRC, conventional CRC 22883 110
Nutt-2003-v1 Affymetrix Brain 50 4 14, 7, 14, 15 CG, CO, NG, NO 12625 20
Pomeroy-2002-v2 Affymetrix Brain 42 5 10, 10, 10, 4, 8 MD, Mglio, Rhab, Ncer, PNET 7129 69
Su-2001 Affymetrix Multi-tissue 174 10 26, 8, 26, 23,12, 11, 7, 27, 6, 28 PR, BL, BR, CO, GA, KI, LI, OV, PA, LU 12533 2
West-2001 Affymetrix Breast 49 2 25,24 ER+, ER- 7129 60
Yeoh-2002-v2 Affymetrix Bone Marrow 248 6 15, 27, 64, 20, 79, 43 BCR-ABL, E2A-PBX1, Hyperdiploid>50, MLL,
TEL-AML1, T-ALL		 12625 20
Alizadeh-2000-v2 Double Channel Blood 62 3 42, 9, 11 DLBCL, FL, CLL 4022 3
Bittner-2000 Double Channel Skin 38 2 19, 19 ML1, ML2 8067 110
Chen-2002 Double Channel Liver 179 2 104, 75 HCC, liver 22699 4
Garber-2001 Double Channel Lung 66 4 17, 40,4, 5 SCC, AC, LCLC, SCLC 24192 2
Lapointe-2004-v2 Double Channel Prostate 110 4 11, 39, 19, 41 PT1, PT2, PT3, Normal 42640 3
Liang-2005 Double Channel Brain 37 3 28, 6, 3 GBM, ODG, normal 24192 20
Risinger-2003 Double Channel Endometrium 42 4 13, 3, 19, 7 PS, CC, E, N 8872 20
Tomlins-2006-v1 Double Channel Prostate 104 5 27, 20, 32, 13, 12 EPI, MET, PCA, PIN, STROMA 20000 4
Tomlins-2006-v2 Double Channel Prostate 92 4 27, 20, 32, 13 EPI, MET, PCA, PIN 20000 20